scSemiProfiler_dev.utils.rrho

scSemiProfiler_dev.utils.rrho(gtdata, semisdata, celltype_key, celltype)

Use RRHO graph to compare the positive and negative markers found using real-profiled and semi-profiled datasets.

Parameters

• gtdata (anndata._core.anndata.AnnData) – Real-profiled (ground truth) data

• semisdata (anndata._core.anndata.AnnData) – Semi-profiled dataset

• celltype_key (str) – The key in anndata.AnnData.obs for storing the cell type information

• celltype (str) – The selected cell type to analyze

Example

>>> rrho(gtdata=gtdata,semisdata=semisdata,celltype_key='celltypes',celltype='CD4')

Return type

None