scSemiProfiler_dev.utils.enrichment_comparison

scSemiProfiler_dev.utils.enrichment_comparison(name, gtdata, semisdata, celltype_key, selectedtype)

Compare the enrichment analysis results using the real-profiled and semi-profiled datasets.

Parameters

• name (str) – Project name

• gtdata (anndata._core.anndata.AnnData) – Real-profiled (ground truth) data

• semisdata (anndata._core.anndata.AnnData) – Semi-profiled dataset

• celltype_key (str) – The key in anndata.AnnData.obs for storing the cell type information

• selectedtype (str) – The selected cell type to analyze

Example

>>> enrichment_comparison(name, gtdata, semisdata, celltype_key = 'celltypes', selectedtype = 'CD4')

Return type

None